78 research outputs found
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Dual state-parameter estimation of hydrological models using ensemble Kalman filter
Hydrologic models are twofold: models for understanding physical processes and models for prediction. This study addresses the latter, which modelers use to predict, for example, streamflow at some future time given knowledge of the current state of the system and model parameters. In this respect, good estimates of the parameters and state variables are needed to enable the model to generate accurate forecasts. In this paper, a dual state-parameter estimation approach is presented based on the Ensemble Kalman Filter (EnKF) for sequential estimation of both parameters and state variables of a hydrologic model. A systematic approach for identification of the perturbation factors used for ensemble generation and for selection of ensemble size is discussed. The dual EnKF methodology introduces a number of novel features: (1) both model states and parameters can be estimated simultaneously; (2) the algorithm is recursive and therefore does not require storage of all past information, as is the case in the batch calibration procedures; and (3) the various sources of uncertainties can be properly addressed, including input, output, and parameter uncertainties. The applicability and usefulness of the dual EnKF approach for ensemble streamflow forecasting is demonstrated using a conceptual rainfall-runoff model. © 2004 Elsevier Ltd. All rights reserved
NF90 Binds the Dengue Virus RNA 3âČ Terminus and is a Positive Regulator of Dengue Virus Replication
Background
Viral RNA translation and replication are regulated by sequence and structural elements in the 5âČ and 3âČ untranslated regions (UTR) and by host cell and/or viral proteins that bind them. Dengue virus has a single-stranded RNA genome with positive polarity, a 5âČ m7GpppG cap, and a conserved 3âČ-terminal stem loop (SL) that is linked to proposed functions in viral RNA transcription and translation. Mechanisms explaining the contributions of host proteins to viral RNA translation and replication are poorly defined, yet understanding host protein-viral RNA interactions may identify new targets for therapeutic intervention. This study was directed at identifying functionally significant host proteins that bind the conserved dengue virus RNA 3âČ terminus.
Methodology/Principal Findings
Proteins eluted from a dengue 3âČ SL RNA affinity column at increasing ionic strength included two with double-strand RNA binding motifs (NF90/DRBP76 and DEAH box polypeptide 9/RNA helicase A (RHA)), in addition to NF45, which forms a heterodimer with NF90. Although detectable NF90 and RHA proteins localized to the nucleus of uninfected cells, immunofluorescence revealed cytoplasmic NF90 in dengue virus-infected cells, leading us to hypothesize that NF90 has a functional role(s) in dengue infections. Cells depleted of NF90 were used to quantify viral RNA transcript levels and production of infectious dengue virus. NF90 depletion was accompanied by a 50%-70% decrease in dengue RNA levels and in production of infectious viral progeny.
Conclusions/Significance
The results indicate that NF90 interacts with the 3âČ SL structure of the dengue RNA and is a positive regulator of dengue virus replication. NF90 depletion diminished the production of infectious dengue virus by more than 50%, which may have important significance for identifying therapeutic targets to limit a virus that threatens more than a billion people worldwide.Ruth L. Kirschstein National Research Service Award (NIH-NRSA GM64985)UNCF-Merck Postdoctoral FellowshipNational Institute of Allergy and Infectious Diseases (U.S.)Ellison Medical Foundatio
International Consensus Statement on Rhinology and Allergy: Rhinosinusitis
Background: The 5 years since the publication of the first International Consensus Statement on Allergy and Rhinology: Rhinosinusitis (ICARâRS) has witnessed foundational progress in our understanding and treatment of rhinologic disease. These advances are reflected within the more than 40 new topics covered within the ICARâRSâ2021 as well as updates to the original 140 topics. This executive summary consolidates the evidenceâbased findings of the document. Methods: ICARâRS presents over 180 topics in the forms of evidenceâbased reviews with recommendations (EBRRs), evidenceâbased reviews, and literature reviews. The highest grade structured recommendations of the EBRR sections are summarized in this executive summary. Results: ICARâRSâ2021 covers 22 topics regarding the medical management of RS, which are grade A/B and are presented in the executive summary. Additionally, 4 topics regarding the surgical management of RS are grade A/B and are presented in the executive summary. Finally, a comprehensive evidenceâbased management algorithm is provided. Conclusion: This ICARâRSâ2021 executive summary provides a compilation of the evidenceâbased recommendations for medical and surgical treatment of the most common forms of RS
Land surface Data Assimilation
Accurate knowledge of spatial and temporal land surface storages and fluxes are essential for addressing a wide range of important, socially relevant science, education, application and management issues. Improved estimates of land surface conditions are directly applicable to agriculture, ecology, civil engineering, water resources management, rainfall-runoff prediction, atmospheric process studies, climate and weather prediction, and disaster management (Houser et al. 2004). © 2010 Springer-Verlag Berlin Heidelberg.status: publishe
Precipitation uncertainty How well do we know this critical hydrological variable
Humans can only survive three days without water -- Human health depends on an adequate supply of clean drinking water, and society depends on water for everything from agriculture to recreation. In 1990, 1.1 billion people did not have access to safe drinking water, mostly in underdeveloped nations. Ultimately, our access to fresh water relies on the fact that water will fall from the sky. However, our ability to measure precipitation is amazingly inadequate. Globally, we measure rainfall over land with an uneven distribution of about 40,000 rain gauges, which together have a total surface area smaller than a football field. We also measure precipitation with ground-based radars and satellites, but these are know to disagree by a factor of two. Measurement of solid precipitation can be off by a factor of five due to gage undercatch, and inadequate satellite wavelengths and algorithms. Further, it is not only the abount of precitation that determines surface water availability, but knowing its timing and duration is also critical for how that precipitation is partitioned into runoff, recharge, and evaporation. This study compares the precipitation averages, variability, and timing for various regions around the world in an attempt to determine how well we currently know this critical hydrological variable
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